OHSU Center for Spatial Systems Biomedicine

Publications

OHSU Publications

Meeting Report: K.E. Beatty and C. Schultz.  "Where chemical biology meets physiology."  Nature Chemical Biology 20, 1254-1255, (2024).  (Article Link)

Review: K.E. Beatty and C.L. Lopez.  "Characteristics of genetically-encoded tags for correlative light and electron microscopy".  Current Opinion in Chemical Biology 76, (2023).  (Article Link).

A. Suyama, K. Devlin, M. Macias Contreras, J.K. Doh, U. Shinde, K.E. Beatty.  "Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins."  Biochemistry 62(11), 1735-43 (2023).  (Article Link).

S.R. Levine, K.E. Beatty. "Investigating b-lactam drug targets in Mycobacterium tuberculosis using chemical probes."  ACS Infect. Diseases 7(2), 461-470 (2021).  (Article Link)

J.K. Doh, S.J. Tobin, K.E. Beatty.  "MiniVIPER is a peptide tag for imaging and translocating proteins in cells."  Biochemistry 59(33), 3051-3059 (2020).  (Article Link)

Review: K.E. Beatty.  "Fluorescent probes for investigating peptidoglycan biosynthesis in mycobacteria."  Current Opinion in Chemical Biology 57, 50-57 (2020).  (Article Link)

J.K. Doh, S.J. Tobin, K.E. Beatty.  "Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins." Bio-protocol 9, e3412 (2019). (Article Link)

J.K. Doh, C.A. Enns, K.E. Beatty. "Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy." Bio-protocol 9, e3413 (2019). (Article Link)

J.K. Doh, Y.H. Chang, C.A. Enns, C.S. Lόpez, K.E. Beatty.  "Imaging VIPER-labeled Cellular Proteins by Correlative Light and Electron Microscopy." Bio-protocol 9, e3414 (2019).  (Article Link)

E.Morgan, J. Doh, K.E. Beatty, N. Reich.  "VIPERnano: Improved Live Cell Intracellular Protein Tracking."  ACS Appl. Mater. Interfaces 11(40), 36383-36390 (2019).  (Article Link)

Commentary: K.E. Beatty.  "Coloring Cell Complexity: The Case for an Expansive Fluorophore Palette."  ACS Central Science 5(9), 1490-1492 (2019).  (Article Link)

J.K. Doh, J.D. White, H.K. Zane, Y.H. Chang, C.S. Lopez, C.A. Enns, K.E. Beatty.  "VIPER is a genetically-encoded tag for fluorescence and electron microscopy." Proc. Natl. Acad. Sci. USA 115(51), 12961-12966 (2018).  (Article Link)

H.K. Zane*, J.K. Doh*, C.A. Enns, K.E. Beatty.  "Versatile interacting peptide (VIP) tags for labeling proteins with bright chemical reporters."  ChemBioChem  18(5), 470-474 (2017).   *Authors contributed equally.  (Article Link)

K.R. Tallman, S.R. Levine, K.E. Beatty.  "Small-Molecule Probes Reveal Esterases with Persistent Activity in Dormant and Reactivating Mycobacterium tuberculosis." ACS Infect. Dis.  2(12), 936-944 (2016).  (Article Link)

K.R. Tallman, S.R. Levine, K.E. Beatty.  "Profiling Esterases in Mycobacterium tuberculosis Using Far-Red Fluorogenic Substrates."  ACS Chem. Biol.  11(7), 1810-1815 (2016).  (Article Link)      

S.R. Levine, K.E. Beatty.  "Synthesis of a far-red fluorophore and its use as an esterase probe in living cells."  Chem. Commun. 52, 1835-1838 (2016).  (Article Link)

K.R. Tallman, K.E. Beatty.  "Far-Red Fluorogenic Probes for Esterase and Lipase Detection."  ChemBioChem 16(1), 70-75 (2015). (Article Link)

 

UC Berkeley Publications

  • E.L. Smith, C.R. Bertozzi, K.E. Beatty.  "An Expanded Set of Fluorogenic Sulfatase Activity Probes."  ChemBioChem, 15(8), 1101-1105 (2014). 

  • K.E. Beatty, M. Williams, B.L. Carlson, B.M. Swarts, R.M. Warren, P.D. van Helden, C.R. Bertozzi.  "Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains."  Proc. Natl. Acad. Sci. USA, 110(32), 12911-12916 (2013).

  • J.S. Rush, K.E. Beatty, C.R. Bertozzi. “Bioluminescent Probes of Sulfatase Activity” ChemBioChem. 11(15), 2096-2099 (2010).

 

Caltech Publications

  • K.E. Beatty.  “Chemical Strategies for Tagging and Imaging the Proteome” Molecular BioSystems, 7, 2360-2367 (2011). 

  • K.E. Beatty, J. Szychowski, J.D. Fisk, D.A. Tirrell.  “A BODIPY-Cyclooctyne for Protein Imaging in Live Cells” ChemBioChem, 12(14), 2137-2139 (2011).

  • K.E. Beatty, J.D. Fisk, B.P. Smart, Y.Y. Lu, J. Szychowski, M.J. Hangauer, J.M. Baskin, C.R. Bertozzi, D.A. Tirrell.  “Live Cell Imaging of Cellular Proteins via a Strain-Promoted Azide-Alkyne Cyclooaddition”  ChemBioChem. 11(15), 2092-2095 (2010).

  • K.E. Beatty, D.A. Tirrell.  “Non-Canonical Amino Acids in Protein Science and Engineering” Protein Engineering, edited by C. Koehrer and T. RajBhandary, Springer-Verlag (Vol. 22, 2009). 

  • J.T. Ngo, J.A. Champion, A. Mahdavi, I.C. Tanrikulu, K.E. Beatty, R.E. Connor, T.H. Yoo, D.C. Dieterich, E.M. Schuman, D.A. Tirrell.  “Cell-Selective Metabolic Labeling of Proteins” Nat. Chem. Biol. 10, 715-717 (2009). 

  • K.E. Beatty, D.A. Tirrell. “Two-Color Labeling of Temporally Defined Protein Populations in Mammalian Cells” Bioorg. Med. Chem. Lett. 18(22), 5995-5999 (2008).

  • K.E. Beatty*, J.C. Liu*, F. Xie, D.C. Dieterich, E.M. Schuman, Q. Wang, D.A. Tirrell.  “Fluorescence Visualization of Newly Synthesized Proteins in Mammalian Cells” Angew. Chem. Int. Ed.  45, 7364-7367 (2006).        *Authors contributed equally.

  • K.E. Beatty, F. Xie, Q. Wang, D.A. Tirrell.  “Selective Dye-Labeling of Newly Synthesized Proteins in Bacterial Cells” J. Am. Chem. Soc.  127, 14150-14151 (2005).

 

UC Santa Barbara Publications

  • J.N. Carter, K.E. Beatty, M.T. Simpson, A. Butler.  “Reactivity of Recombinant and Mutant Vanadium Bromoperoxidase from the Red Alga Corallina officinalis” J. Inorg. Biochem.  91, 59-69 (2002).

 

PUBMED LISTINGS: http://www.ncbi.nlm.nih.gov/pubmed/?term=kimberly+beatty

 

 

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