Publications

OHSU Publications

  • A. Suyama, K. Devlin, M. Macias Contreras, J.K. Doh, U. Shinde, K.E. Beatty.  "Orthogonal Versatile Interacting Peptide Tags for Imaging Cellular Proteins."  Biochemistry (2023; ASAP).  (Article Link).
  • S.R. Levine, K.E. Beatty. "Investigating b-lactam drug targets in Mycobacterium tuberculosis using chemical probes."  ACS Infect. Diseases 7(2), 461-470 (2021).  (Article Link)
  • J.K. Doh, S.J. Tobin, K.E. Beatty.  "MiniVIPER is a peptide tag for imaging and translocating proteins in cells."  Biochemistry 59(33), 3051-3059 (2020).  (Article Link)
  • Review: K.E. Beatty.  "Fluorescent probes for investigating peptidoglycan biosynthesis in mycobacteria."  Current Opinion in Chemical Biology 57, 50-57 (2020).  (Article Link)

  • J.K. Doh, S.J. Tobin, K.E. Beatty.  "Generation of CoilR Probe Peptides for VIPER-labeling of Cellular Proteins." Bio-protocol 9, e3412 (2019). (Article Link)

  • J.K. Doh, C.A. Enns, K.E. Beatty. "Implementing VIPER for Imaging Cellular Proteins by Fluorescence Microscopy." Bio-protocol 9, e3413 (2019). (Article Link)

  • J.K. Doh, Y.H. Chang, C.A. Enns, C.S. Lόpez, K.E. Beatty.  "Imaging VIPER-labeled Cellular Proteins by Correlative Light and Electron Microscopy." Bio-protocol 9, e3414 (2019).  (Article Link)

  • E.Morgan, J. Doh, K.E. Beatty, N. Reich.  "VIPERnano: Improved Live Cell Intracellular Protein Tracking."  ACS Appl. Mater. Interfaces 11(40), 36383-36390 (2019).  (Article Link)

  • Commentary: K.E. Beatty.  "Coloring Cell Complexity: The Case for an Expansive Fluorophore Palette."  ACS Central Science 5(9), 1490-1492 (2019).  (Article Link)

  • J.K. Doh, J.D. White, H.K. Zane, Y.H. Chang, C.S. Lopez, C.A. Enns, K.E. Beatty.  "VIPER is a genetically-encoded tag for fluorescence and electron microscopy." Proc. Natl. Acad. Sci. USA 115(51), 12961-12966 (2018).  (Article Link)

  • H.K. Zane*, J.K. Doh*, C.A. Enns, K.E. Beatty.  "Versatile interacting peptide (VIP) tags for labeling proteins with bright chemical reporters."  ChemBioChem  18(5), 470-474 (2017).   *Authors contributed equally.  (Article Link)

  • K.R. Tallman, S.R. Levine, K.E. Beatty.  "Small-Molecule Probes Reveal Esterases with Persistent Activity in Dormant and Reactivating Mycobacterium tuberculosis." ACS Infect. Dis.  2(12), 936-944 (2016).  (Article Link)

  • K.R. Tallman, S.R. Levine, K.E. Beatty.  "Profiling Esterases in Mycobacterium tuberculosis Using Far-Red Fluorogenic Substrates."  ACS Chem. Biol.  11(7), 1810-1815 (2016).  (Article Link)      

  • S.R. Levine, K.E. Beatty.  "Synthesis of a far-red fluorophore and its use as an esterase probe in living cells."  Chem. Commun. 52, 1835-1838 (2016).  (Article Link)

  • K.R. Tallman, K.E. Beatty.  "Far-Red Fluorogenic Probes for Esterase and Lipase Detection."  ChemBioChem 16(1), 70-75 (2015). (Article Link)

 

UC Berkeley Publications

  • E.L. Smith, C.R. Bertozzi, K.E. Beatty.  "An Expanded Set of Fluorogenic Sulfatase Activity Probes."  ChemBioChem, 15(8), 1101-1105 (2014). 

  • K.E. Beatty, M. Williams, B.L. Carlson, B.M. Swarts, R.M. Warren, P.D. van Helden, C.R. Bertozzi.  "Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains."  Proc. Natl. Acad. Sci. USA, 110(32), 12911-12916 (2013).

  • J.S. Rush, K.E. Beatty, C.R. Bertozzi. “Bioluminescent Probes of Sulfatase Activity” ChemBioChem. 11(15), 2096-2099 (2010).

 

Caltech Publications

  • K.E. Beatty.  “Chemical Strategies for Tagging and Imaging the Proteome” Molecular BioSystems, 7, 2360-2367 (2011). 

  • K.E. Beatty, J. Szychowski, J.D. Fisk, D.A. Tirrell.  “A BODIPY-Cyclooctyne for Protein Imaging in Live Cells” ChemBioChem, 12(14), 2137-2139 (2011).

  • K.E. Beatty, J.D. Fisk, B.P. Smart, Y.Y. Lu, J. Szychowski, M.J. Hangauer, J.M. Baskin, C.R. Bertozzi, D.A. Tirrell.  “Live Cell Imaging of Cellular Proteins via a Strain-Promoted Azide-Alkyne Cyclooaddition”  ChemBioChem. 11(15), 2092-2095 (2010).

  • K.E. Beatty, D.A. Tirrell.  “Non-Canonical Amino Acids in Protein Science and Engineering” Protein Engineering, edited by C. Koehrer and T. RajBhandary, Springer-Verlag (Vol. 22, 2009). 

  • J.T. Ngo, J.A. Champion, A. Mahdavi, I.C. Tanrikulu, K.E. Beatty, R.E. Connor, T.H. Yoo, D.C. Dieterich, E.M. Schuman, D.A. Tirrell.  “Cell-Selective Metabolic Labeling of Proteins” Nat. Chem. Biol. 10, 715-717 (2009). 

  • K.E. Beatty, D.A. Tirrell. “Two-Color Labeling of Temporally Defined Protein Populations in Mammalian Cells” Bioorg. Med. Chem. Lett. 18(22), 5995-5999 (2008).

  • K.E. Beatty*, J.C. Liu*, F. Xie, D.C. Dieterich, E.M. Schuman, Q. Wang, D.A. Tirrell.  “Fluorescence Visualization of Newly Synthesized Proteins in Mammalian Cells” Angew. Chem. Int. Ed.  45, 7364-7367 (2006).        *Authors contributed equally.

  • K.E. Beatty, F. Xie, Q. Wang, D.A. Tirrell.  “Selective Dye-Labeling of Newly Synthesized Proteins in Bacterial Cells” J. Am. Chem. Soc.  127, 14150-14151 (2005).

 

UC Santa Barbara Publications

  • J.N. Carter, K.E. Beatty, M.T. Simpson, A. Butler.  “Reactivity of Recombinant and Mutant Vanadium Bromoperoxidase from the Red Alga Corallina officinalis” J. Inorg. Biochem.  91, 59-69 (2002).

 

PUBMED LISTINGS: http://www.ncbi.nlm.nih.gov/pubmed/?term=kimberly+beatty